species:   Scscl
pid:       PID1581
parent:    Ssc-milR-57
paralog:   
locus:     NW_001820816.1:56486-56561
matures:   ['UGUCUUCGGGACUGUUUAGGGG', 'CGUAGGGAUAGUUUGUGAGAUUGG']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820816.1:56486-56561

8 out of bounds
5 alignments
5 proper strand
4 stranded perfect matches

        ************************             **************************     
UUACUCCACCUGUCUUCGGGACUGUUUAGGGGUCGUUGGUAGAUAUUCGUAGGGAUAGUUUGUGAGAUUGGAGUCG
..((((((...(((((..((((((((((.((((.(((....))))))).))..))))))))..)))))))))))..
----------UGUCUUCGGGACUGUUUAGGGG-------------------------------------------- l=22 a=1 c
-----------------------------------------------CGUAGGGAUAGUUUGUGAGAUUGG----- l=24 a=0 c*
----------UGUCUUCGGGACUGUUUAGGGG-------------------------------------------- l=22 a=1 ma
-----------------------------------------------CGUAGGGAUAGUUUGUGAGAUUGG----- l=24 a=0 ma*

-------------------------------------------------------UAGUUUGUGAGAUUGGAGU-- l=19 a=1 
---------------UCGGGACUGUUUAGGGGUCG----------------------------------------- l=20 a=1 
---------------UCGGGACUGUUUAGGGGUCGUU--------------------------------------- l=22 a=1 
----------UGUCUUCGGGACUGUUUAGGGG-------------------------------------------- l=22 a=1 (c,ma)
----------UGUCUUCGGGACUGUUUAGGGa-------------------------------------------- l=22 a=1 

mb-01111
ax-1011011
ku-01
ss-100111101100
fn-111
